species:   Rhsol
pid:       PID0519
parent:    Rhi-milR-9
paralog:   
locus:     KB317712.1:145370-145464
matures:   ['ACAAUGUGGUCAAGGUCUCUG', 'GACCCUUUGGUGUUCAUUGUGC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317712.1:145370-145464

16 out of bounds
304 alignments
29 proper strand
28 stranded perfect matches

       ************************                               *************************        
AGAGUUCACUACAAUGUGGUCAAGGUCUCUGCACCAUCCACUUUUUGGAAACCUUGUUAAGGCAGACCCUUUGGUGUUCAUUGUGCUUAAACCUG
((.(((...(((((((...((((((..(((((....((((.....))))............)))))..))))))....)))))))....))))).
----------ACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=21 a=1 c
----------------------------------------------------------------GACCCUUUGGUGUUCAUUGUGC--------- l=22 a=0 c*
---------UACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=22 a=7 ma
----------------------------------------------------------------GACCCUUUGGUGUUCAUUGUGCU-------- l=23 a=0 ma*

-----------------------------------------------------UUGUUAAGGCAGACCCUUUGG--------------------- l=21 a=1 
-----------------------------------------UUUUUGGAAACCUUGUUAAGGC-------------------------------- l=22 a=1 
-----------CAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=20 a=2 
-----------CAAUGUGGUCAAGGUCUCUGC--------------------------------------------------------------- l=21 a=1 
-----------CAAUGUGGUCAAGGUCUCUGCAC------------------------------------------------------------- l=23 a=1 
----------ACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=21 a=1 (c)
---------UACAAUGUGGUCAAGGUCU------------------------------------------------------------------- l=19 a=1 
---------UACAAUGUGGUCAAGGUCUC------------------------------------------------------------------ l=20 a=3 
---------UACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=22 a=7 (ma)
---------UACAAUGUGGUCAAGGcCUCUG---------------------------------------------------------------- l=22 a=1 
---------UACAAUGUGGUCAAGGUCUCUGC--------------------------------------------------------------- l=23 a=4 
---------UACAAUGUGGUCAAGGUCUCUGCA-------------------------------------------------------------- l=24 a=2 
---------UACAAUGUGGUCAAGGUCUCUGCAC------------------------------------------------------------- l=25 a=2 
--------CUACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=23 a=1 
-------ACUACAAUGUGGUCAAGGUCUC------------------------------------------------------------------ l=22 a=1 

mb-01111
ax-1001011
ku-01
ss-101111001100
fn-101
